<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE suite SYSTEM "http://testng.org/testng-1.0.dtd">
<suite name="Gradle suite" verbose="0">
  <test name="Gradle test">
    <groups>
      <run>
        <include name="Functional"/>
      </run>
    </groups>
    <classes>
      <class name="jalview.analysis.AAFrequencyTest"/>
      <class name="jalview.analysis.AlignSeqTest"/>
      <class name="jalview.analysis.AlignmentAnnotationUtilsTest"/>
      <class name="jalview.analysis.AlignmentSorterTest"/>
      <class name="jalview.analysis.AlignmentUtilsTests"/>
      <class name="jalview.analysis.AnnotationSorterTest"/>
      <class name="jalview.analysis.CodingUtilsTest"/>
      <class name="jalview.analysis.ConservationTest"/>
      <class name="jalview.analysis.CrossRefTest"/>
      <class name="jalview.analysis.DnaTest"/>
      <class name="jalview.analysis.FinderTest"/>
      <class name="jalview.analysis.GeneticCodesTest"/>
      <class name="jalview.analysis.GroupingTest"/>
      <class name="jalview.analysis.ParsePropertiesTest"/>
      <class name="jalview.analysis.RnaTest"/>
      <class name="jalview.analysis.SeqsetUtilsTest"/>
      <class name="jalview.analysis.SequenceIdMatcherTest"/>
      <class name="jalview.analysis.TestAlignSeq"/>
      <class name="jalview.analysis.scoremodels.FeatureDistanceModelTest"/>
      <class name="jalview.analysis.scoremodels.PIDModelTest"/>
      <class name="jalview.analysis.scoremodels.ScoreMatrixTest"/>
      <class name="jalview.analysis.scoremodels.ScoreModelsTest"/>
      <class name="jalview.bin.ArgsParserTest"/>
      <class name="jalview.bin.CacheTest"/>
      <class name="jalview.bin.CommandLineOperations"/>
      <class name="jalview.bin.HiDPISettingTest1"/>
      <class name="jalview.bin.HiDPISettingTest2"/>
      <class name="jalview.bin.JalviewLiteTest"/>
      <class name="jalview.bin.MemorySettingTest"/>
      <class name="jalview.commands.EditCommandTest"/>
      <class name="jalview.commands.TrimRegionCommandTest"/>
      <class name="jalview.controller.AlignViewControllerTest"/>
      <class name="jalview.datamodel.AlignedCodonFrameTest"/>
      <class name="jalview.datamodel.AlignedCodonIteratorTest"/>
      <class name="jalview.datamodel.AlignedCodonTest"/>
      <class name="jalview.datamodel.AlignmentAnnotationTests"/>
      <class name="jalview.datamodel.AlignmentTest"/>
      <class name="jalview.datamodel.AlignmentViewTest"/>
      <class name="jalview.datamodel.AllColsIteratorTest"/>
      <class name="jalview.datamodel.AllRowsIteratorTest"/>
      <class name="jalview.datamodel.CigarArrayTest"/>
      <class name="jalview.datamodel.ColumnSelectionTest"/>
      <class name="jalview.datamodel.ConcurrentModificationTest"/>
      <class name="jalview.datamodel.DBRefEntryTest"/>
      <class name="jalview.datamodel.HiddenColumnsCursorTest"/>
      <class name="jalview.datamodel.HiddenColumnsTest"/>
      <class name="jalview.datamodel.HiddenSequencesTest"/>
      <class name="jalview.datamodel.MappedFeaturesTest"/>
      <class name="jalview.datamodel.MappingTest"/>
      <class name="jalview.datamodel.MappingTypeTest"/>
      <class name="jalview.datamodel.MatchTest"/>
      <class name="jalview.datamodel.PDBEntryTest"/>
      <class name="jalview.datamodel.RangeElementsIteratorTest"/>
      <class name="jalview.datamodel.ResidueCountTest"/>
      <class name="jalview.datamodel.SearchResultsTest"/>
      <class name="jalview.datamodel.SeqCigarTest"/>
      <class name="jalview.datamodel.SequenceDummyTest"/>
      <class name="jalview.datamodel.SequenceFeatureTest"/>
      <class name="jalview.datamodel.SequenceGroupTest"/>
      <class name="jalview.datamodel.SequenceTest"/>
      <class name="jalview.datamodel.StartRegionIteratorTest"/>
      <class name="jalview.datamodel.VisibleContigsIteratorTest"/>
      <class name="jalview.datamodel.VisibleRowsIteratorTest"/>
      <class name="jalview.datamodel.features.FeatureAttributesTest"/>
      <class name="jalview.datamodel.features.FeatureMatcherSetTest"/>
      <class name="jalview.datamodel.features.FeatureMatcherTest"/>
      <class name="jalview.datamodel.features.FeatureStoreTest"/>
      <class name="jalview.datamodel.features.SequenceFeaturesTest"/>
      <class name="jalview.ext.android.SparseDoubleArrayTest"/>
      <class name="jalview.ext.android.SparseIntArrayTest"/>
      <class name="jalview.ext.android.SparseShortArrayTest"/>
      <class name="jalview.ext.ensembl.EnsemblCdnaTest"/>
      <class name="jalview.ext.ensembl.EnsemblCdsTest"/>
      <class name="jalview.ext.ensembl.EnsemblGeneTest"/>
      <class name="jalview.ext.ensembl.EnsemblGenomeTest"/>
      <class name="jalview.ext.ensembl.EnsemblProteinTest"/>
      <class name="jalview.ext.ensembl.EnsemblRestClientTest"/>
      <class name="jalview.ext.ensembl.EnsemblSeqProxyTest"/>
      <class name="jalview.ext.ensembl.EnsemblXrefTest"/>
      <class name="jalview.ext.ensembl.SpeciesTest"/>
      <class name="jalview.ext.htsjdk.TestHtsContigDb"/>
      <class name="jalview.ext.htsjdk.VCFReaderTest"/>
      <class name="jalview.ext.jmol.JmolCommandsTest"/>
      <class name="jalview.ext.jmol.JmolParserTest"/>
      <class name="jalview.ext.jmol.JmolViewerTest"/>
      <class name="jalview.ext.paradise.TestAnnotate3D"/>
      <class name="jalview.ext.pymol.PymolCommandsTest"/>
      <class name="jalview.ext.pymol.PymolManagerTest"/>
      <class name="jalview.ext.rbvi.chimera.ChimeraCommandsTest"/>
      <class name="jalview.ext.rbvi.chimera.ChimeraConnect"/>
      <class name="jalview.ext.rbvi.chimera.ChimeraXCommandsTest"/>
      <class name="jalview.ext.rbvi.chimera.JalviewChimeraView"/>
      <class name="jalview.ext.so.SequenceOntologyTest"/>
      <class name="jalview.fts.core.FTSRestClientTest"/>
      <class name="jalview.fts.service.pdb.PDBFTSPanelTest"/>
      <class name="jalview.fts.service.pdb.PDBFTSRestClientTest"/>
      <class name="jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest"/>
      <class name="jalview.fts.threedbeacons.TDBeaconsPanelTest"/>
      <class name="jalview.gui.AlignFrameTest"/>
      <class name="jalview.gui.AlignViewportTest"/>
      <class name="jalview.gui.AlignmentPanelTest"/>
      <class name="jalview.gui.AnnotationChooserTest"/>
      <class name="jalview.gui.AnnotationColumnChooserTest"/>
      <class name="jalview.gui.AnnotationLabelsTest"/>
      <class name="jalview.gui.AnnotationPanelTest"/>
      <class name="jalview.gui.AnnotationRowFilterTest"/>
      <class name="jalview.gui.AppVarnaTest"/>
      <class name="jalview.gui.CalculationChooserTest"/>
      <class name="jalview.gui.ColourMenuHelperTest"/>
      <class name="jalview.gui.FeatureSettingsTest"/>
      <class name="jalview.gui.FontChooserTest"/>
      <class name="jalview.gui.FreeUpMemoryTest"/>
      <class name="jalview.gui.HelpTest"/>
      <class name="jalview.gui.JAL1353bugdemo"/>
      <class name="jalview.gui.JvOptionPaneTest"/>
      <class name="jalview.gui.JvSwingUtilsTest"/>
      <class name="jalview.gui.PaintRefresherTest"/>
      <class name="jalview.gui.PairwiseAlignmentPanelTest"/>
      <class name="jalview.gui.PopupMenuTest"/>
      <class name="jalview.gui.ProgressBarTest"/>
      <class name="jalview.gui.ScalePanelTest"/>
      <class name="jalview.gui.SeqCanvasTest"/>
      <class name="jalview.gui.SeqPanelTest"/>
      <class name="jalview.gui.SequenceRendererTest"/>
      <class name="jalview.gui.StructureChooserTest"/>
      <class name="jalview.gui.StructureViewerTest"/>
      <class name="jalview.gui.structurechooser.StructureChooserQuerySourceTest"/>
      <class name="jalview.io.AnnotatedPDBFileInputTest"/>
      <class name="jalview.io.AnnotationFileIOTest"/>
      <class name="jalview.io.BackupFilesTest"/>
      <class name="jalview.io.BioJsHTMLOutputTest"/>
      <class name="jalview.io.ClustalFileTest"/>
      <class name="jalview.io.CrossRef2xmlTests"/>
      <class name="jalview.io.EmblFlatFileTest"/>
      <class name="jalview.io.FeaturesFileTest"/>
      <class name="jalview.io.FileFormatsTest"/>
      <class name="jalview.io.FileIOTester"/>
      <class name="jalview.io.FileLoaderTest"/>
      <class name="jalview.io.FormatAdapterTest"/>
      <class name="jalview.io.GenBankFileTest"/>
      <class name="jalview.io.HtmlFileTest"/>
      <class name="jalview.io.IdentifyFileTest"/>
      <class name="jalview.io.JSONFileTest"/>
      <class name="jalview.io.Jalview2xmlBase"/>
      <class name="jalview.io.JalviewExportPropertiesTests"/>
      <class name="jalview.io.JalviewFileViewTest"/>
      <class name="jalview.io.NewickFileTests"/>
      <class name="jalview.io.PfamFormatInputTest"/>
      <class name="jalview.io.PhylipFileTests"/>
      <class name="jalview.io.RNAMLfileTest"/>
      <class name="jalview.io.ScoreMatrixFileTest"/>
      <class name="jalview.io.SequenceAnnotationReportTest"/>
      <class name="jalview.io.StockholmFileTest"/>
      <class name="jalview.io.TCoffeeScoreFileTest"/>
      <class name="jalview.io.WindowsFileLoadAndSaveTest"/>
      <class name="jalview.io.cache.AppCacheTest"/>
      <class name="jalview.io.cache.JvCacheableInputBoxTest"/>
      <class name="jalview.io.gff.ExonerateHelperTest"/>
      <class name="jalview.io.gff.Gff3HelperTest"/>
      <class name="jalview.io.gff.GffHelperBaseTest"/>
      <class name="jalview.io.gff.GffHelperFactoryTest"/>
      <class name="jalview.io.gff.GffTests"/>
      <class name="jalview.io.gff.InterProScanHelperTest"/>
      <class name="jalview.io.gff.SequenceOntologyLiteTest"/>
      <class name="jalview.io.vcf.VCFLoaderTest"/>
      <class name="jalview.math.MatrixTest"/>
      <class name="jalview.math.RotatableMatrixTest"/>
      <class name="jalview.math.SparseMatrixTest"/>
      <class name="jalview.project.Jalview2xmlTests"/>
      <class name="jalview.renderer.OverviewRendererTest"/>
      <class name="jalview.renderer.OverviewResColourFinderTest"/>
      <class name="jalview.renderer.ResidueColourFinderTest"/>
      <class name="jalview.renderer.ResidueShaderTest"/>
      <class name="jalview.renderer.ScaleRendererTest"/>
      <class name="jalview.renderer.seqfeatures.FeatureColourFinderTest"/>
      <class name="jalview.renderer.seqfeatures.FeatureRendererTest"/>
      <class name="jalview.schemes.AnnotationColourGradientTest"/>
      <class name="jalview.schemes.Blosum62ColourSchemeTest"/>
      <class name="jalview.schemes.BuriedColourSchemeTest"/>
      <class name="jalview.schemes.ClustalxColourSchemeTest"/>
      <class name="jalview.schemes.ColourSchemePropertyTest"/>
      <class name="jalview.schemes.ColourSchemesTest"/>
      <class name="jalview.schemes.FeatureColourTest"/>
      <class name="jalview.schemes.HelixColourSchemeTest"/>
      <class name="jalview.schemes.HydrophobicColourSchemeTest"/>
      <class name="jalview.schemes.JalviewColourSchemeTest"/>
      <class name="jalview.schemes.PIDColourSchemeTest"/>
      <class name="jalview.schemes.ResidueColourSchemeTest"/>
      <class name="jalview.schemes.ResiduePropertiesTest"/>
      <class name="jalview.schemes.StrandColourSchemeTest"/>
      <class name="jalview.schemes.TurnColourSchemeTest"/>
      <class name="jalview.schemes.UserColourSchemeTest"/>
      <class name="jalview.structure.AtomSpecModelTest"/>
      <class name="jalview.structure.AtomSpecTest"/>
      <class name="jalview.structure.Mapping"/>
      <class name="jalview.structure.StructureCommandTest"/>
      <class name="jalview.structure.StructureMappingTest"/>
      <class name="jalview.structure.StructureSelectionManagerTest"/>
      <class name="jalview.structures.models.AAStructureBindingModelTest"/>
      <class name="jalview.urls.AppletUrlProviderFactoryTest"/>
      <class name="jalview.urls.CustomUrlProviderTest"/>
      <class name="jalview.urls.DesktopUrlProviderFactoryTest"/>
      <class name="jalview.urls.IdentifiersUrlProviderTest"/>
      <class name="jalview.urls.UrlLinkDisplayTest"/>
      <class name="jalview.urls.UrlLinkTableModelTest"/>
      <class name="jalview.urls.UrlProviderTest"/>
      <class name="jalview.util.ArrayUtilsTest"/>
      <class name="jalview.util.CaseInsensitiveStringTest"/>
      <class name="jalview.util.ColorUtilsTest"/>
      <class name="jalview.util.ComparisonTest"/>
      <class name="jalview.util.DBRefUtilsTest"/>
      <class name="jalview.util.DnaUtilsTest"/>
      <class name="jalview.util.FormatTest"/>
      <class name="jalview.util.JSONUtilsTest"/>
      <class name="jalview.util.Log4jTest"/>
      <class name="jalview.util.MapListTest"/>
      <class name="jalview.util.MappingUtilsTest"/>
      <class name="jalview.util.MathUtilsTest"/>
      <class name="jalview.util.MessageManagerTest"/>
      <class name="jalview.util.ParseHtmlBodyAndLinksTest"/>
      <class name="jalview.util.PlatformTest"/>
      <class name="jalview.util.QuickSortTest"/>
      <class name="jalview.util.SetUtilsTest"/>
      <class name="jalview.util.ShiftListTest"/>
      <class name="jalview.util.SparseCountTest"/>
      <class name="jalview.util.StringUtilsTest"/>
      <class name="jalview.util.UrlLinkTest"/>
      <class name="jalview.util.matcher.ConditionTest"/>
      <class name="jalview.util.matcher.MatcherTest"/>
      <class name="jalview.viewmodel.OverviewDimensionsHideHiddenTest"/>
      <class name="jalview.viewmodel.OverviewDimensionsShowHiddenTest"/>
      <class name="jalview.viewmodel.ViewportRangesTest"/>
      <class name="jalview.viewmodel.styles.ViewStyleTest"/>
      <class name="jalview.workers.AlignCalcManagerTest"/>
      <class name="jalview.ws.PDBSequenceFetcherTest"/>
      <class name="jalview.ws.SequenceFetcherTest"/>
      <class name="jalview.ws.dbsources.EmblXmlSourceTest"/>
      <class name="jalview.ws.dbsources.PfamFullTest"/>
      <class name="jalview.ws.dbsources.PfamSeedTest"/>
      <class name="jalview.ws.dbsources.RemoteFormatTest"/>
      <class name="jalview.ws.dbsources.RfamFullTest"/>
      <class name="jalview.ws.dbsources.RfamSeedTest"/>
      <class name="jalview.ws.dbsources.UniprotTest"/>
      <class name="jalview.ws.dbsources.XfamFetcherTest"/>
      <class name="jalview.ws.ebi.EBIFetchClientTest"/>
      <class name="jalview.ws.gui.Jws2ParamView"/>
      <class name="jalview.ws.jabaws.DisorderAnnotExportImport"/>
      <class name="jalview.ws.jabaws.JalviewJabawsTestUtils"/>
      <class name="jalview.ws.jabaws.MinJabawsClientTests"/>
      <class name="jalview.ws.jabaws.RNAStructExportImport"/>
      <class name="jalview.ws.jws2.ParameterUtilsTest"/>
      <class name="jalview.ws.rest.RestClientTest"/>
      <class name="jalview.ws.rest.ShmmrRSBSService"/>
      <class name="jalview.ws.seqfetcher.DbRefFetcherTest"/>
      <class name="jalview.ws.sifts.SiftsClientTest"/>
      <class name="jalview.ws.utils.UrlDownloadClientTest"/>
      <class name="mc_view.AtomTest"/>
      <class name="mc_view.BondTest"/>
      <class name="mc_view.PDBChainTest"/>
      <class name="mc_view.PDBfileTest"/>
      <class name="mc_view.ResidueTest"/>
    </classes>
  </test> <!-- Gradle test -->
</suite> <!-- Gradle suite -->